1519 cd asimov-dosCoss/ 1520 ls -l 1521 cd .. 1522 vi h.txt 1523 history | grep time 1524 ls -l 1525 ls -lrt /home/jnavas/asimov/ScipionUserData/projects/10025 1526 cd asimovCoss 1527 ls -lrt 1528 scipion & 1529 scipion last 1530 ps -uax | grep scipion 1531 kill -9 15631 1532 ps -uax | grep scipion 1533 kill -9 13385 1534 ps -uax | grep scipion 1535 scipion last 1536 ls -l 1537 cd .. 1538 scipion & 1539 cd ScipionUserData/ 1540 ls -l 1541 cd projects/ 1542 ls -l 1543 scp -r /home/jnavas/asimov/ScipionUserData/projects/10025 scipion@asimov: 1544 scipion last 1545 ps -aux | grep scipìon 1546 ps -aux | grep scipioon 1547 ps -aux | grep scipion 1548 kill -9 13383 13384 25862 25863 25864 1549 ps -aux | grep scipion 1550 scipion last 1551 ps -aux | grep scipion 1552 kill -9 29455 29453 1553 scipion last 1554 time scipion last 1555 ps -aux | grep scipion 1556 kill -9 1441 1442 1443 1557 time scipion last 1558 + 1559 time scipion last 1560 ls -l 1561 cd 10025 1562 ls -l 1563 vi testMd.cpp 1564 scipion xmipp_compile testMd.cpp 1565 time testMd.cpp 1566 time testMd 1567 time ./testMd 1568 vi testMd.cpp 1569 ls -l Runs/001948_XmippProtExtractParticles/images.xmd 1570 time ./testMd 1571 vi testMd.cpp 1572 scipion xmipp_compile testMd.cpp 1573 ./testMd 1574 cat testMd.cpp 1575 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1576 rm -rf PPP.xmd 1577 ./testMd 1578 scipion last 1579 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1580 rm -rf PPP.xmd 1581 ls -l 1582 ./testMd 1583 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1584 vi Runs/001948_XmippProtExtractParticles/images.xmd 1585 vi PPP.xmd 1586 mv PPP.xmd backup.xmd 1587 ls -l 1588 ./testMd 1589 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1590 ./testMd 1591 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1592 vi PPP.xmd 1593 ls -l 1594 vi backup.xmd 1595 vi PPP.xmd 1596 ./testMd 1597 vi PPP.xmd 1598 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1599 ./testMd 1600 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1601 ./testMd 1602 vi testMd.cpp 1603 xmipp_compile testMd.cpp 1604 scipion xmipp_compile testMd.cpp 1605 time ./testMd 1606 vi testMd.cpp 1607 scipion xmipp_compile testMd.cpp 1608 ./testMd 1609 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1610 rm -rf PPP.xmd 1611 ./testMd 1612 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1613 vi testMd.cpp 1614 scipion xmipp_compile testMd.cpp 1615 time ./testMd 1616 vi testMd.cpp 1617 time ./testMd 1618 rm -rf PPP.xmd 1619 time ./testMd 1620 scipion xmipp_compile --debug testMd.cpp 1621 scipion xmipp_compile --debug -i testMd.cpp 1622 valgrind --tool=callgrind ./testMd 1623 scipion xmipp_compile testMd.cpp 1624 time ./testMd 1625 vi testMd.cpp 1626 scipion xmipp_compile testMd.cpp 1627 ./testMd 1628 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1629 ./testMd 1630 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1631 scipion & 1632 cd .. 1633 cd Two 1634 cd Heterogeneity2Structures/ 1635 ls -l Runs/000210_XmippProtProjMatch/ 1636 ls -l Runs/000210_XmippProtProjMatch/extra/ 1637 ls -l Runs/000002_ProtImportParticles/ 1638 ls -l Runs/000002_ProtImportParticles/extra/ 1639 rm Runs/000002_ProtImportParticles/extra/all_images.stk 1640 mv ~/all_images.stk Runs/000002_ProtImportParticles/extra/ 1641 ps -aux | grep scipion 1642 kill -9 13411 13413 1643 ps -aux | grep scipion 1644 clear 1645 ps -aux | grep scipion 1646 scipion & 1647 ./testMd 1648 scipion & 1649 cd .. 1650 ls -l 1651 cd 10010/ 1652 ls -l 1653 cd .. 1654 cd 10025 1655 ls -l 1656 ./testMd 1657 time ./testMd 1658 ./testMd 1659 clear 1660 ls -l 1661 cd .. 1662 ls -l 1663 ls -l InitialVolume_Tutorial/ 1664 ls -l Tutorialntro/ 1665 cd TestOF2D/ 1666 ls -l 1667 cp memory/get_Mem_OF_Small.sh . 1668 sh get_Mem_OF_Small.sh 1669 vi get_Mem_OF_Small.sh 1670 sh get_Mem_OF_Small.sh 1671 ms_print massif.out.26273 > ultimo.txt 1672 ls -l *.sh 1673 sh get_Times_OF_Small.sh 1674 sh get_Times_OF_Small.sh > last_Times.txt 1675 vi last_Times.txt 1676 sh get_Times_OF_Small.sh > last_Times2.txt 1677 exit 1678 cd sc 1679 cd scipion/ 1680 xcompile 1681 git status 1682 xcompile 1683 git status 1684 git diff software/em/xmipp/libraries/data/metadata.cpp 1685 git diff software/em/xmipp/libraries/data/metadata.h 1686 git status 1687 git diff 1688 git status 1689 git diff software/em/xmipp/libraries/data/metadata_sql.h 1690 git diff software/em/xmipp/libraries/data/metadata_sql.cpp 1691 git pull 1692 xcompile 1693 git status 1694 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata.h software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1695 xcompile 1696 git status 1697 git diff pyworkflow/em/packages/xmipp3/viewer.py 1698 git status 1699 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata.h software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1700 xcompile 1701 git status 1702 xcompile 1703 git pull 1704 xcompile 1705 git status 1706 git checkout vilas-tiltpair 1707 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata.h software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1708 git checkout vilas-tiltpair 1709 git status 1710 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1711 git status 1712 git diff software/em/xmipp/external/delaunay/delaunay.cpp 1713 clear 1714 git diff software/em/xmipp/external/delaunay/delaunay.cpp 1715 git add software/em/xmipp/external/delaunay/delaunay.cpp 1716 git status 1717 git diff software/em/xmipp/external/delaunay/dcel.cpp 1718 git status 1719 git diff software/em/xmipp/external/delaunay/dcel.cpp 1720 git add software/em/xmipp/external/delaunay/dcel.cpp 1721 clear 1722 git status 1723 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1724 git status 1725 clear 1726 git status 1727 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1728 git add software/em/xmipp/external/delaunay/voronoi.cpp 1729 git status 1730 git commit -m "Split triangles when collinear point inserted" 1731 git push 1732 git pull 1733 git status 1734 git push 1735 git status 1736 git checkout software/em/xmipp/external/delaunay/delaunay.cpp 1737 git status 1738 git add software/em/xmipp/external/delaunay/dcel.cpp 1739 git commit -m "Return value in select closes point function" 1740 git push 1741 git checkout master 1742 git status 1743 clear 1744 git status 1745 git diff software/em/xmipp/libraries/data/metadata.h 1746 git diff software/em/xmipp/libraries/data/metadata_sql.h 1747 xcompile 1748 git pull 1749 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata.h software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1750 git pull 1751 xcompile 1752 . 1753 xcompile 1754 exit 1755 cd '/home/jnavas/workspace/Delaunay_Scipion/Debug' 1756 ./Delaunay_Scipion 1757 ./Delaunay_Scipion 10000 10000 1758 ./Delaunay_Scipion config/config.txt 10000 10000 1759 ./Delaunay_Scipion config/config.txt 3000 3000 1760 cd 1761 cd ScipionUserData/projects/10025/ 1762 ls -l 1763 ./testMd 1764 rm -rf callgrind.out.10442 callgrind.out.2969 callgrind.out.5528* 1765 ./testMd 1766 scipion & 1767 ./testMd 1768 scipion & 1769 ./testMd 1770 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1771 vi testMd.cpp 1772 scipion xmipp_compile testMd.cpp 1773 time ./testMd 1774 eclipse & 1775 ./testMd 1776 clear 1777 ./testMd 1778 clear 1779 ./testMd 1780 clear 1781 ./testMd 1782 clear 1783 ./testMd 1784 clear 1785 ./testMd 1786 time ./testMd 1787 vi testMd.cpp 1788 scipion xmipp_compile testMd.cpp 1789 ./testMd 1790 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1791 rm -rf PPP.xmd 1792 ./testMd 1793 diff PPP.xmd Runs/001948_XmippProtExtractParticles/images.xmd 1794 vi testMd.cpp 1795 scipion xmipp_compile testMd.cpp 1796 time ./testMd 1797 vi /home/jnavas/scipion/config/scipion.conf 1798 cd 1799 cd ScipionUserData/ 1800 ls -l 1801 cd projects/ 1802 ls -l 1803 history -> h.txt 1804 history > h.txt 1805 vi h.txt 1806 exit 1807 eclipse & 1808 sh openDropbox.sh 1809 cd ScipionUserData/ 1810 cd projects/ 1811 vi h.txt 1812 cd TestOF2D/ 1813 ls -l 1814 rm -rf last_Times2.txt 1815 sh get_Times_OF_Small.sh > last_Times2.txt 1816 vi last_Times2.txt 1817 sh get_Times_OF_Small.sh > last_Times3.txt 1818 vi last_Times3.txt 1819 sh get_Times_OF_Small.sh > last_Times2.txt 1820 vi last_Times2.txt 1821 eclipse & 1822 exit 1823 cd workspace/Delaunay_Scipion/Debug/ 1824 c .. 1825 cd .. 1826 Debug/Delaunay_Scipion config/config.txt 1827 cd 1828 scipion & 1829 cd workspace/Delaunay_Scipion/ç 1830 cd workspace/Delaunay_Scipion/ 1831 clear 1832 ls -l 1833 ./Debug/Delaunay_Scipion config/config.txt 2500 2500 1834 ./Debug/Delaunay_Scipion config/config.txt 3000 3000 1835 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1836 ls -l /home/jnavas/scipion/software/em/xmipp/external/delaunay/ 1837 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1838 ./Debug/Delaunay_Scipion config/config.txt -5000 5000 1839 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1840 ./Debug/Delaunay_Scipion config/config.txt 3000 2000 1841 ./Debug/Delaunay_Scipion config/config.txt 3500 2500 1842 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1843 ./Debug/Delaunay_Scipion config/config.txt 3100 2100 1844 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1845 ./Debug/Delaunay_Scipion config/config.txt 3000 2000 1846 ./Debug/Delaunay_Scipion config/config.txt 3100 2000 1847 ./Debug/Delaunay_Scipion config/config.txt 2900 2100 1848 ./Debug/Delaunay_Scipion config/config.txt 3000 2100 1849 ./Debug/Delaunay_Scipion config/config.txt 2950 2050 1850 ./Debug/Delaunay_Scipion config/config.txt 2925 2025 1851 ./Debug/Delaunay_Scipion config/config.txt 2900 2000 1852 ./Debug/Delaunay_Scipion config/config.txt 5000 5000 1853 eclipse & 1854 ps -aux | grep eclipse 1855 clear 1856 ps -aux | grep eclipse 1857 clear 1858 ps -aux | grep eclipse 1859 kill -9 3039 3914 1860 ps -aux | grep eclipse 1861 eclipse & 1862 exiot 1863 exit 1864 cd ScipionUserData/projects/ 1865 ls -l 1866 ln -s /home/jnavas/asimov/ScipionUserData/projects/10025 10025 1867 rm -rf 10025 1868 ln -s /home/jnavas/asimov/ScipionUserData/projects/10025 10025 1869 cd 10025 1870 ls -l 1871 cd 1872 sshfs coss@asimov: asimov 1873 cd ScipionUserData/projects/ 1874 ls -l 1875 cd 10025 1876 ls -l 1877 cd 1878 cd scipion/ 1879 git statusç 1880 git status 1881 git diff software/em/xmipp/libraries/data/metadata.cpp 1882 git diff software/em/xmipp/libraries/data/metadata_sql.cpp 1883 git status 1884 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1885 xcompile 1886 git checkout master 1887 xcompile 1888 git checkout jn_optimization 1889 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1890 git status 1891 git pull 1892 git checkout jn_optimization 1893 git status 1894 git pull 1895 ls -l 1896 ls -l software/em/xmipp/external/delaunay/ 1897 ls -l 1898 git checkout vilas-tiltpair 1899 git checkout master 1900 git status 1901 git checkout 1e34284 software/em/xmipp/applications/programs/movie_optical_alignment_cpu/movie_optical_alignment_cpu.cpp 1902 git status 1903 git checkout software/em/xmipp/applications/programs/movie_optical_alignment_cpu/movie_optical_alignment_cpu.cpp 1904 git status 1905 git reset HEAD software/em/xmipp/applications/programs/movie_optical_alignment_cpu/movie_optical_alignment_cpu.cpp 1906 git checkout software/em/xmipp/applications/programs/movie_optical_alignment_cpu/movie_optical_alignment_cpu.cpp 1907 git status 1908 git stash list 1909 git help stach 1910 git help stash 1911 git checkout vilas-tiltpair 1912 git checkout software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 1913 git status 1914 git checkout vilas-tiltpair 1915 git status 1916 git checkout master 1917 vi /home/jnavas/scipion/config/scipion.conf 1918 git status 1919 git pull 1920 git checkout jn_optimization 1921 git pull 1922 vi /home/jnavas/scipion/config/scipion.conf 1923 xcompile 1924 git pull 1925 git checkout vilas-tiltpair 1926 git status 1927 git diff software/em/xmipp/external/delaunay/delaunay.cpp 1928 git co software/em/xmipp/external/delaunay/delaunay.cpp 1929 git checkout software/em/xmipp/external/delaunay/delaunay.cpp 1930 git status 1931 git diff software/em/xmipp/external/delaunay/point.cpp 1932 git checkout software/em/xmipp/external/delaunay/point.cpp 1933 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1934 clear 1935 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1936 git checkout software/em/xmipp/external/delaunay/voronoi.cpp 1937 git diff software/em/xmipp/external/delaunay/polygon.cpp 1938 clear 1939 git diff software/em/xmipp/external/delaunay/polygon.cpp 1940 git add software/em/xmipp/external/delaunay/polygon.cpp 1941 git commit -m "Fix infinite slope between points" 1942 git push 1943 git status 1944 git checkout software/em/xmipp/libraries/data/metadata_sql.cpp 1945 git checkout jn_optimization 1946 git status 1947 clear 1948 git status 1949 git pull 1950 xcompilñe 1951 xcompile 1952 git checkout vilas-tiltpair 1953 xcompile 1954 git pull 1955 xcompile 1956 git checkout jn_optimization 1957 vi .git/config 1958 git checkout master 1959 git pull 1960 git checkout jn_optimization 1961 git pull 1962 git merge master 1963 git pull 1964 git merge master 1965 xcompile 1966 git checkout vilas-tiltpair 1967 git status+ç 1968 git status 1969 git add software/em/xmipp/external/delaunay/delaunay.cpp 1970 git commit -m "Add maximum number of closest points searched" 1971 git push 1972 git checkout master 1973 git diff software/em/xmipp/external/delaunay/point.cpp 1974 clear 1975 git diff software/em/xmipp/external/delaunay/point.cpp 1976 clear 1977 git status 1978 git diff software/em/xmipp/external/delaunay/point.cpp 1979 git add software/em/xmipp/external/delaunay/point.cpp 1980 git status 1981 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1982 git status 1983 clear 1984 git diff software/em/xmipp/external/delaunay/voronoi.cpp 1985 git checkout software/em/xmipp/external/delaunay/voronoi.cpp 1986 git software/em/xmipp/external/delaunay/delaunay.cpp 1987 git diff software/em/xmipp/external/delaunay/delaunay.cpp 1988 clear 1989 git diff software/em/xmipp/external/delaunay/delaunay.cpp 1990 git add software/em/xmipp/external/delaunay/delaunay.cpp 1991 git commit -m "Fix collinear points in Voronoi areas" 1992 git push 1993 git checkout jn_optimization 1994 xcompile 1995 vi /home/jnavas/scipion/config/scipion.conf 1996 exit 1997 xmipp_test_metadata 1998 cd scipion/ 1999 cd .. 2000 xmipp_test_metadata 2001 cd scipion/ 2002 git pull 2003 git checkout master 2004 git checkout software/em/xmipp/external/delaunay/dcel.cpp software/em/xmipp/external/delaunay/dcel.h software/em/xmipp/external/delaunay/defines.h software/em/xmipp/external/delaunay/delaunay.cpp software/em/xmipp/external/delaunay/voronoi.cpp software/em/xmipp/external/delaunay/graph.cpp 2005 git checkout master 2006 git pull 2007 xcompile 2008 xmipp_test_metadata 2009 xcompile 2010 xmipp_test_metadata 2011 xcompile 2012 xmipp_test_metadata 2013 xcompile 2014 xmipp_test_metadata 2015 xcompile 2016 xmipp_test_metadata 2017 xcompile 2018 xmipp_test_metadata 2019 xcompile 2020 git checkout test_xmipp_programs 2021 git stash 2022 git checkout test_xmipp_programs 2023 git pull 2024 git checkout master 2025 git pull 2026 git checkout test_xmipp_programs 2027 git merge master 2028 git checkout master 2029 git merge test_xmipp_programs 2030 git branch -d test_xmipp_programs 2031 ./scipion install -j 5 2032 scipion test --show 2033 scipion test --help 2034 scipion test --show --mode classes 2035 scipion test --show --mode all 2036 ls -l 2037 ll data/tests/ 2038 ll data/tests/testXmipp/ 2039 ll data/tests/testXmipp/input/ 2040 ll data/tests/testXmipp/ 2041 ll data/tests/testXmipp/ -h 2042 ll data/tests/testXmipp/test/ 2043 scipion test --show --mode classes 2044 scipion test tests.em.programs.test_programs_xmipp.AngularDiscreteAssign 2045 scipion test tests.em.programs.test_programs_xmipp.AngularDistance 2046 scipion test tests.em.programs.test_programs_xmipp.AngularDistributionShow 2047 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2048 scipion test tests.em.programs.test_programs_xmipp.AngularProjectLibrary 2049 scipion test tests.em.programs.test_programs_xmipp.AngularProjectLibraryMpi 2050 scipion test tests.em.programs.test_programs_xmipp.AngularProjectionMatching 2051 scipion test tests.em.programs.test_programs_xmipp.AngularProjectionMatchingMpi 2052 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2053 clear 2054 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2055 find . -iname neighborhood.sel 2056 mkdir /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2057 ls -l /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2058 cp ./data/tests/testXmipp/goldStandard/xmipp_angular_neighbourhood/neighborhood.sel /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2059 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2060 ls -l /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2061 cp ./data/tests/testXmipp/goldStandard/xmipp_angular_neighbourhood/neighborhood.sel /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2062 ls -l /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01 2063 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2064 vi /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01/stdout.txt 2065 vi /home/jnavas/scipion/data/tests/testXmipp/test/xmipp_angular_neighbourhood_01/stderr.txt 2066 scipion test tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2067 git status 2068 git diff pyworkflow/tests/em/programs/base.py 2069 git checkout pyworkflow/tests/em/programs/base.py 2070 git status 2071 git diff pyworkflow/tests/em/programs/test_programs_xmipp.py 2072 scipion test tests.em.programs.test_programs_xmipp 2073 git status 2074 git add pyworkflow/tests/em/programs/test_programs_xmipp.py 2075 git commit -m "Fix argments misspelling --i1 --i2" 2076 git push 2077 git status 2078 git pull 2079 git push 2080 git checkout jn_optimization 2081 git status 2082 git stash list 2083 git stash pop 2084 git stash list 2085 history > h.txt 2086 vi h.txt 2087 xmipp_test_metadata 2088 xcompile 2089 xmipp_test_metadata 2090 git status 2091 git add software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 2092 git commit -m "Fix segmentation fault when using empty metadate" 2093 git push 2094 git checkout master 2095 git pull 2096 git checkout jn_optimization 2097 git pull 2098 git merge master 2099 git status 2100 git diff software/em/xmipp/libraries/data/metadata.cpp 2101 xcompile 2102 git status 2103 git add software/em/xmipp/libraries/data/metadata.cpp software/em/xmipp/libraries/data/metadata_sql.cpp software/em/xmipp/libraries/data/metadata_sql.h 2104 git commit -m "Fix merge" 2105 git pull 2106 xcompile 2107 git checkout test_xmipp_programs 2108 cd data/tests/testXmipp/ 2109 ls -l 2110 python parse_XML.py 2111 ls -l 2112 ls -l test_programs_xmipp.py 2113 python parse_XML.py 2114 ls -l 2115 pwd 2116 cp test_programs_xmipp.py /home/jnavas/scipion/pyworkflow/tests/em/programs/ 2117 scipion test --show tests.em.programs.test_programs_xmipp 2118 cd 2119 cd scipion/ 2120 scipion test --show tests.em.programs.test_programs_xmipp 2121 scipion test --show tests 2122 pwd 2123 cd pyworkflow/tests/em/programs/ 2124 scipion test --show tests 2125 git checkout master 2126 clear 2127 scipion test --show tests 2128 git st 2129 git status 2130 git diff test_programs_xmipp.py 2131 scipion test --show tests 2132* git statu 2133 scipion test --show 2134 ls -l 2135 cd 2136 cd scipion/ 2137 ls -l 2138 rm .-rf h.txt 2139 git status 2140 git checkout data/tests/testXmipp/parse_XML.py 2141 git checkout data/tests/testXmipp/parse_XML.py pyworkflow/tests/em/programs/test_programs_xmipp.py 2142 git status 2143 git checkout .settings/ Debug/ software/em/xmipp/resources/test/MDInfo_FTYu5g software/em/xmipp/resources/test/MDInfo_FTYu5g.sqlite software/em/xmipp/resources/test/MDInfo_FTYu5g.xmd 2144 clear 2145 git status 2146 git checkout software/em/xmipp/resources/test/MDInfo_FTYu5g 2147 git pull 2148 git checkout master 2149 git pull 2150 git checkout test_xmipp_programs 2151 git pull 2152 git merge master 2153 git pull 2154 git checkout master 2155 cd pyworkflow/tests/em/programs/ 2156 ls -l 2157 scipion test --show 2158 scipion test --show tests.em.programs.test_programs_xmipp 2159 scipion test tests.em.programs.test_programs_xmipp 2160 scipion test --show tests.em.programs.test_programs_xmipp 2161 git status 2162 clear 2163 git status 2164 scipion test --show tests.em.programs.test_programs_xmipp 2165 scipion test --show -h 2166 scipion test --show --mode classes 2167 scipion test --show --mode classes tests.em.programs.test_programs_xmipp 2168 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDiscreteAssign 2169 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDistance 2170 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDistributionShow 2171 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularNeighbourhood 2172 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularProjectLibrary 2173 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularProjectLibraryMpi 2174 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularProjectionMatching 2175 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularProjectionMatchingMpi 2176 git pull 2177 xcompile 2178* scipion test pyworkflow.tests.em.programs.test_programs_xmipp.Ang 2179 scipion test --show tests.em.programs.test_programs_xmipp 2180 scipion test --show --mode classes tests.em.programs.test_programs_xmipp 2181 scipion test --show -h 2182 scipion test --show --mode all tests.em.programs.test_programs_xmipp 2183 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDiscreteAssign 2184 scipion test test_programs_xmipp.AngularDiscreteAssign 2185 scipion test test_programs_xmipp.AngularDistance 2186 cd 2187 cd scipion/ 2188 scipion test test_programs_xmipp.AngularDistance 2189 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDiscreteAssign 2190 ls -l pyworkflow/tests/em/programs/ 2191 cat pyworkflow/tests/em/programs/test_programs_xmipp.py 2192 clear 2193 scipion test --show --mode all tests.em.programs.test_programs_xmipp 2194 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDiscreteAssign.test_case1 2195 scipion test pyworkflow.tests.em.programs.test_programs_xmipp.AngularDiscreteAssign 2196 scipion test em.programs.test_programs_xmipp.AngularDiscreteAssign 2197 scipion test --show em.programs.test_programs_xmipp 2198 scipion test pyworkflow.tests.em.programs.test_programs_xmipp 2199 scipion test em.programs.test_programs_xmipp 2200 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance/ 2201 mkdir /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2202 cp /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance/angleComparison.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2203 scipion test em.programs.test_programs_xmipp 2204 ls -l data/tests/xmipp_programs/input/ 2205 ls -l data/tests/xmipp_programs/input/discre* 2206 ls -l data/tests/xmipp_programs/input/aFewProjections.s 2207 ls -l data/tests/xmipp_programs/input/aFewProjections.s* 2208 ls -l data/tests/xmipp_programs/tmpLink/xmipp_* 2209 ls -l data/tests/xmipp_programs/tmpLink/xmipp_angular_dis* 2210 ls -l data/tests/xmipp_programs/tmpLink/xmipp_angular_distance_0* 2211 scipion test em.programs.test_programs_xmipp 2212* ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distanc 2213 scipion test em.programs.test_programs_xmipp 2214 ls -l data/tests/xmipp_programs/tmpLink/ 2215 scipion test em.programs.test_programs_xmipp 2216 ls -l data/tests/xmipp_programs/gold/ 2217 ls -l data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2218 rm -rf data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2219 mv data/tests/xmipp_programs/gold/xmipp_angular_distance/ data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2220 ls -l data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2221 ls -l data/tests/xmipp_programs/gold/xmipp_angular_distance/ 2222 scipion test em.programs.test_programs_xmipp 2223* mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_discrete_assign/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_discrete_assign 2224 scipion test em.programs.test_programs_xmipp 2225 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_discrete_assign/ 2226 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_discrete_assign_01/ 2227 ls -l data/tests/xmipp_programs/gold/xmipp_angular_distance 2228 ls -l data/tests/xmipp_programs/gold/xmipp_angular_distance_01/ 2229 cd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_discrete_assign_01/ 2230 ls -l 2231 mv assigned_angles.txt assigned_angles.xmd 2232 scipion test em.programs.test_programs_xmipp 2233 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_neighbourhood/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_neighbourhood_01/ 2234 scipion test em.programs.test_programs_xmipp 2235 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_neighbourhood_01/ 2236 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_angular_neighbourhood_01/ 2237 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_neighbourhood_01/ 2238 scipion test em.programs.test_programs_xmipp 2239 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_angular_project_library_05/output_projections.doc 2240 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_project_library_05/output_projections.doc 2241 scipion test em.programs.test_programs_xmipp 2242 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_projection_matching/ 2243 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_projection_matching/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_projection_matching_01/ 2244 scipion test em.programs.test_programs_xmipp 2245 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_projection_matching_* 2246 scipion test em.programs.test_programs_xmipp 2247 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink//xmipp_mpi_angular_project_library_ 2248 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink//xmipp_mpi_angular_project_library_* 2249 mv /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_project_library_06/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_project_library_06/ 2250 mv /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_project_library_07/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_project_library_07/ 2251 scipion test em.programs.test_programs_xmipp 2252 mv /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_projection_matching_01/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_projection_matching_01 2253 mv /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_projection_matching_02/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_projection_matching_02 2254 scipion test em.programs.test_programs_xmipp 2255 clear 2256 scipion test em.programs.test_programs_xmipp 2257 mv scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_project_library_08/ scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_project_library_08 2258 ls -l scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_project_library* 2259 mv /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_project_library_08/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_project_library_08 2260 scipion test em.programs.test_programs_xmipp 2261 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_angular_projection_matching_01/reference.doc /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_projection_matching_01/reference.doc 2262 scipion test em.programs.test_programs_xmipp 2263 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_angular_project_library_01/output_projections.doc /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_project_library_01/output_projections.doc 2264 scipion test em.programs.test_programs_xmipp 2265 ls -l scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance* 2266 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_angular_distance* 2267 git status 2268 git diff ../../../../../scripts/run_tests.py 2269 git checkout ../../../../../scripts/run_tests.py 2270 git diff ../../../../../pyworkflow/tests/em/programs/base.py 2271 git checkout ../../../../../pyworkflow/tests/em/programs/base.py 2272 git diff ../../../../../pyworkflow/tests/em/programs/test_programs_xmipp.py 2273 clear 2274 git status 2275 scipion test em.programs.test_programs_xmipp 2276 cd .. 2277 ls -l 2278 ls -l xmipp_mpi_angular_ 2279 ls -l xmipp_mpi_angular_* 2280 ls -l xmipp_mpi_angular_ 2281 ls -l 2282 ls -l xmipp_mpi_angular_projection_matching 2283 rm -rf xmipp_mpi_angular_projection_matching_01 xmipp_mpi_angular_projection_matching_02 2284 rm -rf xmipp_mpi_angular_project_library_06 xmipp_mpi_angular_project_library_07 xmipp_mpi_angular_project_library_08 2285 git checkout test_xmipp_programs 2286 ls -l 2287 git status 2288 diff xmipp_angular_discrete_assign xmipp_angular_discrete_assign_01/ 2289 diff xmipp_angular_distance xmipp_angular_distance_01/ 2290 git checkout master 2291 ls -l 2292 scipion test em.programs.test_programs_xmipp 2293 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_project_library_* 2294 scipion test em.programs.test_programs_xmipp 2295 scipion test --show 2296 scipion test tests.em.programs.test_programs_xmipp 2297 cd .. 2298 ls -l 2299 scipion test tests.em.programs.test_programs_xmipp 2300 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_image_align_01/aligned_alignment.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_image_align_01/aligned_alignment.xmd 2301 scipion test tests.em.programs.test_programs_xmipp 2302 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_micrograph_scissor/ 2303 scipion test tests.em.programs.test_programs_xmipp 2304 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_micrograph_scissor_01/images.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_micrograph_scissor_01/images.xmd 2305 diff scipion/data/tests/xmipp_programs/tmpLink/xmipp_metadata_utilities_03/out4.doc scipion/data/tests/xmipp_programs/gold/xmipp_metadata_utilities_03/out4.doc 2306 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_metadata_utilities_03/out4.doc /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_metadata_utilities_03/out4.doc 2307 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_metadata_split_02/splitted000001.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_metadata_split_02/splitted000001.xmd 2308 diff scipion/data/tests/xmipp_programs/tmpLink/xmipp_metadata_utilities_03/out4.doc scipion/data/tests/xmipp_programs/gold/xmipp_metadata_utilities_03/out4.doc 2309 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_micrograph_scissor_01/images.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_micrograph_scissor_01/images.xmd 2310 scipion test tests.em.programs.test_programs_xmipp 2311 ls -l tmpLink/xmipp_nma_alignment_01/stdout.txt 2312 ls -l tmpLink/xmipp_nma_alignment_01/ 2313 scipion test tests.em.programs.test_programs_xmipp 2314 ls -l tmpLink/xmipp_nma_alignment_01/ 2315 ls -l 2316 ls -l output/ 2317 ls -l tmpLink/ 2318 ls -l input/ 2319 ls -l gold/ 2320 scipion test tests.em.programs.test_programs_xmipp 2321 ls -l tmpLink/xmipp_nma_alignment_01 2322 vi tmpLink/xmipp_nma_alignment_01/stderr.txt 2323 cat tmpLink/xmipp_nma_alignment_01/stderr.txt 2324 scipion test tests.em.programs.test_programs_xmipp 2325 cat tmpLink/xmipp_nma_alignment_01/stderr.txt 2326 scipion test tests.em.programs.test_programs_xmipp 2327 cat tmpLink/xmipp_nma_alignment_01/stderr.txt 2328 scipion test tests.em.programs.test_programs_xmipp 2329 cat tmpLink/xmipp_nma_alignment_01/stderr.txt 2330 scipion test tests.em.programs.test_programs_xmipp 2331 cat tmpLink/xmipp_nma_alignment_01/stderr.txt 2332 ls -l tmpLink/xmipp_nma_alignment_01 2333 scipion test tests.em.programs.test_programs_xmipp 2334 ls -l tmpLink/xmipp_pdb_nma_deform_01/ 2335 vi tmpLink/xmipp_phantom_create_01/stderr.txt 2336 cat tmpLink/xmipp_phantom_create_01/stdout.txt 2337 cat tmpLink/xmipp_phantom_create_01/stderr.txt 2338 ls -l tmpLink/xmipp_phantom_create_01/ 2339 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_phantom_create/ 2340 scipion test tests.em.programs.test_programs_xmipp 2341 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_phantom_simulate_microscope_02/smallStackPlusCtf.stk /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_phantom_simulate_microscope_02/smallStackPlusCtf.stk 2342 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_phantom_simulate_microscope_02/smallStackPlusCtf.stk 2343 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_phantom_simulate_microscope_02/smallStackPlusCtf.stk 2344 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_phantom_transform/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_phantom_transform_01 2345 scipion test tests.em.programs.test_programs_xmipp 2346 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_reconstruct_art 2347 scipion test tests.em.programs.test_programs_xmipp 2348 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_art_pseudo/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_art_pseudo_01 2349 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_fourier/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_fourier_01 2350 scipion test tests.em.programs.test_programs_xmipp 2351 ls -l 2352 ssh -keygen 2353 ssh-keygen 2354 ls /home/jnavas/.ss* 2355 ls /home/jnavas/.ssh/ 2356 ls -l /home/jnavas/.ssh/ 2357 vi /home/jnavas/.ssh/id_rsa.pub 2358 scipion test tests.em.programs.test_programs_xmipp 2359 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_fsc/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_fsc_01 2360 scipion test tests.em.programs.test_programs_xmipp 2361 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr/statistics.xmd 2362 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01 2363 scipion test tests.em.programs.test_programs_xmipp 2364 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2365 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2366 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2367 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2368 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2369 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2370 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2371 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2372 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2373 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2374 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2375 vi /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd 2376 vi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2377 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2378 cp /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2379 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_resolution_ssnr_01/statistics.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_resolution_ssnr_01/statistics.xmd 2380 scipion test tests.em.programs.test_programs_xmipp 2381 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_detect_missing_wedge/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_detect_missing_wedge_01 2382 scipion test tests.em.programs.test_programs_xmipp 2383 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_tomo_detect_missing_wedge_01/stdout.txt /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_detect_missing_wedge_01/stdout.txt 2384 scipion test tests.em.programs.test_programs_xmipp 2385 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_extract_subvolume/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_extract_subvolume_01 2386 scipion test tests.em.programs.test_programs_xmipp 2387 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_tomo_extract_subvolume_01/vertices.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_extract_subvolume_01/vertices.xmd 2388 scipion test tests.em.programs.test_programs_xmipp 2389 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_remove_fluctuations/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_tomo_remove_fluctuations_01 2390 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_add_noise/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_add_noise_01 2391 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_adjust_volume_grey_levels/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_adjust_volume_grey_levels_01 2392 scipion test tests.em.programs.test_programs_xmipp 2393 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_transform_add_noise_01/noisyGaussian.spi /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_add_noise_01/noisyGaussian.spi 2394 scipion test tests.em.programs.test_programs_xmipp 2395 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_center_image/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_center_image_01 2396 scipion test tests.em.programs.test_programs_xmipp 2397 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_transform_geometry_05/newGeo.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_geometry_05/newGeo.xmd 2398 scipion test tests.em.programs.test_programs_xmipp 2399 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_mirror/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_mirror_01 2400 scipion test tests.em.programs.test_programs_xmipp 2401 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_morphology/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_morphology_01 2402 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_normalize/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_normalize_01 2403 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_range_adjust/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_range_adjust_01 2404 scipion test tests.em.programs.test_programs_xmipp 2405 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_transform_symmetrize_01/smallStackSymmetrized.stk /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_symmetrize_01/smallStackSymmetrized.stk 2406 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_threshold/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_transform_threshold_01 2407 scipion test tests.em.programs.test_programs_xmipp 2408 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_center/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_center_01 2409 scipion test tests.em.programs.test_programs_xmipp 2410 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_correct_bfactor/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_correct_bfactor_01 2411 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_enhance_contrast/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_enhance_contrast_01 2412 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_find_symmetry/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_find_symmetry_01 2413 scipion test tests.em.programs.test_programs_xmipp 2414 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_from_pdb/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_from_pdb_01 2415 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_reslice/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_reslice_01 2416 scipion test tests.em.programs.test_programs_xmipp 2417 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_to_pseudoatoms/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_to_pseudoatoms_01 2418 scipion test tests.em.programs.test_programs_xmipp 2419 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_volume_to_pseudoatoms_01/pseudo.pdb /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_to_pseudoatoms_01/pseudo.pdb 2420 scipion test tests.em.programs.test_programs_xmipp 2421 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_to_web/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_volume_to_web_01 2422 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_xray_import/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_xray_import_01 2423 scipion test tests.em.programs.test_programs_xmipp 2424 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_xray_import_01/ 2425 scipion test tests.em.programs.test_programs_xmipp 2426 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_xray_psf_create/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_xray_psf_create_01 2427 scipion test tests.em.programs.test_programs_xmipp 2428 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_export_emx_01/micrographs.emx 2429 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_export_emx_01/stderr.txt 2430 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_export_emx_01/ 2431 cat /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_export_emx_01/stderr.txt 2432 scipion test tests.em.programs.test_programs_xmipp 2433 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_wbp/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_reconstruct_wbp_01 2434 scipion test tests.em.programs.test_programs_xmipp 2435 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_import_emx_03/part_align.emx /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_import_emx_03/part_align.xmd 2436 :q! 2437 scipion test tests.em.programs.test_programs_xmipp 2438 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_reconstruct_wbp/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_reconstruct_wbp_01 2439 scipion test tests.em.programs.test_programs_xmipp 2440* 2441 scipion test tests.em.programs.test_programs_xmipp 2442 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_reconstruct_fourier/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_reconstruct_fourier_01 2443 scipion test tests.em.programs.test_programs_xmipp 2444 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_ml_align2d_01/ml2d_extra/iter001/iter_classes.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_ml_align2d_01/ml2d_extra/iter001/iter_classes.xmd 2445 scipion test tests.em.programs.test_programs_xmipp 2446 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_ml_align2d_03/ml2d_extra/iter000/iter_classes.stk /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_ml_align2d_03/ml2d_extra/iter000/iter_classes.stk 2447 scipion test tests.em.programs.test_programs_xmipp 2448 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mlf_align2d/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mlf_align2d_01 2449 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_mlf_align2d/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_mlf_align2d_01 2450 scipion test tests.em.programs.test_programs_xmipp 2451 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mlf_align2d_01/mlf2d_classes.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mlf_align2d_01/mlf2d_classes.xmd 2452 scipion test tests.em.programs.test_programs_xmipp 2453 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_ml_refine3d_01/ml3d_ml2dimages.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_ml_refine3d_01/ml3d_ml2dimages.xmd 2454 scipion test tests.em.programs.test_programs_xmipp 2455 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_mlf_refine3d_01/ 2456* diff /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_mlf_refine3d_01/mlf3d_mlf2d_images.xmd 2457 scipion test tests.em.programs.test_programs_xmipp 2458 vi /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_metadata_convert_to_spider_01/stderr.txt 2459* xmipp_ 2460 scipion test tests.em.programs.test_programs_xmipp 2461 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_rotational_pca/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_rotational_pca_01 2462 scipion test tests.em.programs.test_programs_xmipp 2463 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_image_rotational_pca_01/reference.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_rotational_pca_01/reference.xmd 2464 cp /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_image_rotational_pca_01/reference.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_rotational_pca_01/ 2465 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_image_rotational_pca_01/reference.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_rotational_pca_01/reference.xmd 2466 scipion test tests.em.programs.test_programs_xmipp 2467* mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_class_average/ /home/jnavas/scipion/data/tests/xmi 2468 scipion test tests.em.programs.test_programs_xmipp 2469 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_angular_class_average_01/projmatch_Ref3D_001.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_class_average_01/projmatch_Ref3D_001.xmd 2470 scipion test tests.em.programs.test_programs_xmipp 2471 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_continuous_assign/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_angular_continuous_assign_01 2472 scipion test tests.em.programs.test_programs_xmipp 2473 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_classify_CL2D/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_classify_CL2D_01 2474 scipion test tests.em.programs.test_programs_xmipp 2475 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_classify_CL2D_01/ 2476 ls -l /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_classify_CL2D_01/images.xmd 2477 scipion test tests.em.programs.test_programs_xmipp 2478 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_sort/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_sort_01 2479 scipion test tests.em.programs.test_programs_xmipp 2480 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_image_sort_01/sorted.stk /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_image_sort_01/sorted.stk 2481 scipion test tests.em.programs.test_programs_xmipp 2482 mv /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_ml_tomo/ /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_ml_tomo_01 2483* scipion test tests.em.programs.test_ 2484 diff /home/jnavas/scipion/data/tests/xmipp_programs/tmpLink/xmipp_mpi_ml_tomo_01/test1/iter22_it000001_ref.xmd /home/jnavas/scipion/data/tests/xmipp_programs/gold/xmipp_mpi_ml_tomo_01/test1/iter22_it000001_ref.xmd 2485 scipion test --show 2486 scipion test --show tests.em.programs.test_programs_xmipp 2487 scipion test --show em.programs.test_programs_xmipp 2488 scipion test --show 2489 scipion test --show --mode classes test_programs_xmipp 2490 scipion test --show --show 2491 scipion test --help 2492 scipion test --show --mode classes tests.em.programs.test_programs_xmipp 2493 scipion test tests.em.programs.test_programs_xmipp 2494 time scipion test tests.em.programs.test_programs_xmipp 2495 git checkout vilas-tiltpair 2496 git pull 2497 git checkout jn_optimization 2498 git pull 2499 xcompile 2500 git status 2501 git add ../../../software/em/xmipp/external/delaunay/point.cpp 2502 git status 2503 git commit -m "Setting new threshold for collinear points" 2504 git push 2505 git pull 2506 git push 2507 git checkout master 2508 git pull 2509 git checkout jn_optimization 2510 git pull 2511 git merge master 2512 git push 2513 git status 2514 xcompile 2515 scipion --test --show 2516 scipion -test --show 2517 scipion test --show 2518 history > h.txt