Scipion Wiki

Scipion is an image processing framework for 3D EM. It integrates several software packages for the elucidation of 3D structures and allows the execution of image processing workflows. Additionally, processes can be detailedly traced and carefully automatically reproduced.

General Information

• Project Definition: Project Definition
• Architecture
• Development Environment Configuration: Development environment configuration
• Infrastructure & Accounts: Servers, svn, accounts, etc
• Welcome Package: Welcome Package for dummy developers
• StyleGuide: Common set of principles to be applied during the design or redesign process.
• Appion Workshop: State of the art

Ontology

• Ontology
• Ontology Implementation
• Ontology History
• Performance Test: Performance Test

Scipion Desktop Client

• Call Protocol Dialog: the dynamic dialog to call any protocol.
• Filenames duplicity
• Import Data
• Scipion menus
• Process Object Selection Dialog: the generic dialog to select input/output data to the protocols (like micrographs, CTFs, etc.)

Execution Host

• Scipion Wrappers: General Overview about Scipion Wrappers
• Host Directory Structure

Scipion Server

• Rsync
• Rsync - File Transfer Process
• Log4j and GlassFish: Log4j configuration and integration with Glassfish
• Remote Machine Authentication Management
• Pojos, Converters and Transfers Objects
• AspectJ Configuration
• Exceptions Handling

Scipion Ont

• Introduction
• OntologyWA
• Configuration
• TODO

Workflow Engine

• Workflow Engine Activiti

Old Stuff

Documentation

• Workflow:Different Workflows

Meeting

• 14/Jan/2011
• 13/Jan/2011
• 28/Jun/2010
• 27/Jul/2010

Software

Software

Developers

• Project plan in Gantter
• Logical & Physical Types and how to store objects
• DataBase
• Launcher System
• Log4j and JPA: Log4j managing JPA logs
• Installing Glassfish App. Server
• Infrastructure & Accounts: Servers, svn, accounts, etc
• Software Structure: Functional Description